Yujia Huang, etc.,al. [preprint]Streamlined CRISPR-based assays for detection and subtyping of avian influenza. https://doi.org/10.1101/2025.08.21.25334105
Avian influenza viruses (AIVs) are zoonotic pathogens that pose an increasing global threat due to their potential for human-to-human transmission, pandemic emergence and significant economic losses in agriculture. These concerns underscore the need for rapid, sensitive and specific tools to detect and differentiate circulating AIV subtypes and clades. Current AIV diagnostic methods rely on specialized equipment and trained personnel, limiting their use in the field and in low-resource settings. Here, we extended SHINE (Streamlined Highlighting of Infections to Navigate Epidemics), a CRISPR-based platform that enables detection and subtyping of AIVs. We designed, optimized, and validated SHINE assay for the H5 AIV detection using both fluorescence and lateral flow readout, achieving 100% specificity with PCR-based assays when tested on seasonal influenza-positive clinical samples, and a limit of detection of 121.7 copies/μL on vaccine-derived H5 viral seedstocks. To expand the scope of avian influenza detection, we also designed and validated a SHINE assay targeting the 2.3.4.4b A(H5N1) lineage, in response to the ongoing H5N1 outbreak in cattle in the United States, and a SHINE assay specific to Eurasian H7 lineage to discriminate against North American H7 lineage. Together, these SHINE assays offer a promising platform for AIV diagnosis and surveillance, particularly in settings with limited laboratory infrastructure.
See Also:
Latest articles in those days:
- Modeling Airborne Influenza in Three Dimensions 2 days ago
- Increased contact transmission of contemporary Human H5N1 compared to Bovine and Mountain Lion H5N1 in a hamster model 2 days ago
- Immunity to hemagglutinin and neuraminidase results in additive reductions in airborne transmission of influenza H1N1 virus in ferrets 2 days ago
- A modelling exploration of potential spatiotemporal risk of high pathogenicity avian influenza virus introduction to Danish dairy herds through the contaminated environment 2 days ago
- Emergence of a novel H4N6 avian influenza virus with mammalian adaptation isolated from migratory birds in Zhejiang Province, China, 2024 2 days ago
[Go Top] [Close Window]


