Ye Tian, etc.,al. Nucleic acid detection and genomic sequence analysis of one H5N1 avian influenza virus from wide birds around Qinghai Lake. Chinese Qinghai Journal of Animal and Veterinary S
In August 2022, there was an unusual mortality event among wild ducks in Qinghai Province, China. The nucleic acid was extracted from the collected tissues of the dead wild ducks, and the M gene of avian influenza virus(AIV) was first detected by universal RT-PCR and then the H5/H7/H9 specific genes were detected by using subtyping primers. The wild duck tissues were found to contain the nucleic acid of H5 subtype AIV. The complete geneome of detected AIV was further sequenced by next generation sequence, and the 8 segments of the AIV were obtained. Analysis using Basic Local Alignment Search Tool revealed that, except for the NS gene, the other segments showed the highest homology with those of the H5N1 subtype. The HA gene cleavage site exhibited the characters of highly pathogenic avian influenza (HPAI) virus. The strain detected from the wild ducks was named A/Wigeon/Qinghai/2022(H5N1). Genetic evolution analysis of the HA gene indicated that A/Wigeon/Qinghai/2022(H5N1) belonged to the 2.3.4.4b subclade including H5N1 and H5N8, which has been circulating in wild birds in recent years, while showing a distant genetic relationship with the strains that were prevalent in Qinghai Province from 2005 to 2015. This study indicates that the genetic diversity of H5 subtype AIV derived from wild birds in Qinghai Lake is abundant, emphasizing the need for continuous monitoring of AIV carried by wild birds in the area.
See Also:
Latest articles in those days:
- Determinants of the Seasonal Influenza Vaccination Uptake Among People Aged 50 Years or Above During and After the Pandemic: A Systematic Review 10 hours ago
- [preprint]A GIS-based framework for standardized environmental characterization in One-Health surveillance: a case study of HPAI monitoring in wetlands 11 hours ago
- First detection and transatlantic introduction of Influenza A(H3N2) subclade K (J.2.4.1) into Ecuador: insights from genomic sentinel surveillance 11 hours ago
- Assessment of influenza virus and coronavirus tropism, replication competence and disease severity in ex vivo and in vitro cultures of the human respiratory tract 1 days ago
- Characterization of bovine-derived H5N1 viruses expressing fluorescent and luminescent reporter proteins 1 days ago
[Go Top] [Close Window]


