Resources: Consensus sequences for U.S. H5N1 clade 2.3.4.4b
submited by kickingbird at Apr, 23, 2024 16:27 PM from Andersen Laboratory at Scripps Research
BioProject: PRJNA1102327
Consensus genomes for 8 segments were generated with EPI_ISL_19032063 (source: GISAID) as a reference using iVar v1.4.2. Minimum depth was set at 1, minimum quality at 20, and the consensus threshold at 50%.
The consensus genomes are in ./fasta/.
The metadata from SRA is in ./metadata/.
Alignments of individual segments are in ./alignments/.
See Also:
Latest news in those days:
Consensus genomes for 8 segments were generated with EPI_ISL_19032063 (source: GISAID) as a reference using iVar v1.4.2. Minimum depth was set at 1, minimum quality at 20, and the consensus threshold at 50%.
The consensus genomes are in ./fasta/.
The metadata from SRA is in ./metadata/.
Alignments of individual segments are in ./alignments/.
- Canada: Highly pathogenic avian influenza in Alberta, May 11, 2026 22 hours ago
- Canada: Highly pathogenic avian influenza in Alberta, May 11, 2026 22 hours ago
- Canada: Highly pathogenic avian influenza in Saskatchewan, May 1, 2026 22 hours ago
- Canada: Highly pathogenic avian influenza in Saskatchewan, April 24, 2026 22 hours ago
- China: A human case of avian influenza A(H5N6) reported in Chongqing Municipality 3 days ago
[Go Top] [Close Window]
